Package: drugsens
Title: Automated Analysis of 'QuPath' Output Data and Metadata
        Extraction
Description: A comprehensive toolkit for analyzing microscopy data
        output from 'QuPath' software. Provides functionality for
        automated data processing, metadata extraction, and statistical
        analysis of imaging results. The methodology implemented in
        this package is based on Labrosse et al. (2024)
        <doi:10.1016/j.xpro.2024.103274> "Protocol for quantifying drug
        sensitivity in 3D patient-derived ovarian cancer models", which
        describes the complete workflow for drug sensitivity analysis
        in patient-derived cancer models.
Version: 0.1.0
BugReports: https://git.scicore.unibas.ch/ovca-research/drugsens/-/issues
SystemRequirements: QuPath™ 4.0.0 or higher
Authors@R: c(
    person("Flavio", "Lombardo", , "flavio.lombardo@unibas.ch", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-4853-6838")),
    person("Ricardo Coelho", role = c("cph")),   
    person("Ovarian Cancer Research", role = c("cph")),   
    person("University of Basel and University Hospital Basel", role = c("cph"))   
    )
URL: https://git.scicore.unibas.ch/ovca-research/drugsens/
Maintainer: Flavio Lombardo <flavio.lombardo@unibas.ch>
License: MIT + file LICENSE
Imports: dplyr, ggplot2, ggpubr, knitr, roxygen2, stats, stringr,
        tidyr, tidyselect, utils, testthat (>= 3.0.0)
Depends: R (>= 4.2)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests:
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libxml2-dev
Repository: https://flalom.r-universe.dev
Date/Publication: 2025-06-02 12:40:48 UTC
RemoteUrl: https://github.com/flalom/drugsens
RemoteRef: HEAD
RemoteSha: 815d4cc23d9c496232792debef0973e52073f52c
NeedsCompilation: no
Packaged: 2026-10-01 10:52:54 UTC; root
Author: Flavio Lombardo [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-4853-6838>),
  Ricardo Coelho [cph],
  Ovarian Cancer Research [cph],
  University of Basel and University Hospital Basel [cph]